Neuron Computing and Physiology for Spatial Memory & Intelligence
Research Field
I am a systems and computational neuroscientist working in the field of learning, memory, goal-directed spatial navigation, and NeuroAI. Trained in classical cellular neurophysiology and electric engineering, I had my postdoc training in Janelia Research Campus of Howard Hughes Medical Institute. From there, I gradually formed my own ideas for how to bridge computational thinking, engineering and hardcore subcellualr electrophysiology and multiphoton imaging, addressing a central problem in the brain science: how do neurons process signals and transform inputs, form memories and generate outputs? What are the algorithms that are constrained by the biophysics and biological realities, and work to support the required computational goals and the cognitive processes?
In Taiwan, I am actively promoting and trying to shape a new field called NeuroAI. The tenet of NeuroAI is to put the general science of distributed processing in biological and artificial neural networks back at the center of guiding the research of cognition, neuropsychology and the theory of mind. I am a co-founder of Taiwan NeuroAI Summer School, and currently the Scientific Coordinator for the Bernstein Node Taiwan of Bernstein Network Computational Neuroscience.
Neuro-Behavioral Algorithms Laboratory for Spatial Intelligence
Spatial Navigation, Memory & Computing Mechanisms of Neurons
A fundamental challenge in systems neuroscience is to understand how the properties of individual cells support complex brain functions during behavior. One most extraordinary feature of the higher cognitive functions lies in our ability to achieve goals while flexibly and rapidly adapting to behaviorally relevant variables (or “contexts”) in highly dynamic environments.
How does the brain achieve it? And how is that based on experiences (i.e., learning and memory)? I propose to approach this problem by focusing on the dorsal hippocampus, one most well studied system crucial for goal-oriented spatial behavior and memory. Because of the wealthy understanding of the basic cellular physiology and behavioral correlates, the problem to deconstruct dynamic circuit computations in terms of biophysical neuron properties becomes more tractable.
For instance, hippocampal pyramidal cells are one of the few cell types in which the remarkable nonlinear input integration with subcellular precision (dendritic spikes) and their functional consequences are best understood (see Highlight for examples). They provide an important foundation for the proposed study.
Key problem: cellular mechanisms causally supporting algorithmic functions of memory and spatial navigation
How do rapidly dynamic, context-dependent circuit functions during memory-guided navigational behavior arise as consequences of electrophysiological and biophysical properties of neurons in the hippocampus?
This is not a brand-new quest. However, we contend that algorithms—sets of logical steps for completing a task—serving “sub-goals” across the organizational levels (neural to behavioral) are still critically missing.
How does the spatiotemporal structure of inputs, including circuit architecture (subcellular connectivities with excitatory and local inhibitory neurons) and their time-varying synaptic properties, shape the output of principal pyramidal cells during behavior?
Strategies & Approaches
Inspired by neuroethology, we believe that mechanics of spatial intelligence involves comparisons (self vs. environment; memory vs. observation; state vs. plan) conforming to hierarchically organized sub-goals. Top-down and bottom-up approaches shall be considered together to meet at the middle, algorithmic level—particularly, biophysics and microcircuit architectures form scaffolds that constrain neural algorithms.
Our team designed new conceptual and analytical methods, which transformed innovative neurotechnologies to a framework delineating hippocampal neuro-behavioral algorithms over several levels.
(A) Single-neuron integration; implementation of synaptic algorithms
(B) Neural circuit structural and functional constraints
(C) Empirically based neural integration and learning rules of networks
(D) Accurately quantifiable spatial behavior; behavioral algorithms
To resolve input-output transformation of neurons, the approaches adopted in the lab require the abilities to precisely characterizing properties of synaptic inputs, including their kinetics and spatial locations in the dendrites of the postsynaptic cell, as well as the underlying biophysical mechanisms (e.g., ion channels) and the computational properties they can confer. These are to be considered in the behavioral context or/and directly tested during behavior.
Methodologies
My lab will apply patch-clamp (intracellular) recording in acute brain slices and in awake, behaving mice, combined and complemented with an array of techniques including mouse behavior in virtual reality (VR) and real-world environments, virus-assisted neural tracing, computational modeling and high-speed (adaptive line-illumination) two-photon imaging with synaptic resolution (SLAP2).
We amplify our strengths through substantial collaborations. They range from integrative mechanosensory cognition (Chih-Cheng Chen, Kuo-Sheng Lee), optophysiology (Kaspar Podgorski, Allen Institute), optogenetics development (Wan-Chen Lin), massively parallel hippocampal neuro-behavioral dynamics (Yu-Wei Wu) to brain-inspired circuit learning models (Aaron Milstein, Rutgers University).
We are now working along a few exciting directions:
- Biophysics-informed one-shot synaptic algorithms for learning hippocampal place fields
Keywords: one-shot learning, learning rule, dendritic integration, Behavioral Time-Scale Synaptic Plasticity, 3-Factor Learning, instructive signal, neuromodulator, patch clamp, multicompartmental neuron modeling, optophysiology
- Single-trial behavioral-neural dynamics underlying Bayesian integration of self-motion and visual cues
Keywords: experimental computational neuroethology, path integration, spatial navigation under uncertainty, Bayesian inference, behavioral algorithm, virtual reality, CASTEL, visual foundational models, Green Learning, NeuroAI
- Interaction of sensory input, proprioception and memory-dependent cortico-hippocampal neural processes for simple & complex spatial navigation
Keywords: mechanosensing ion channels, Acid-Sensing Ion Channels (ASICs), one-step transsynaptic circuit mapping, chemogenetics, 2-D vector-based navigation, large-scale electrophysiology with planner microwire arrays, Neuropixels 2.0, two-photon calcium imaging, Cognitive Map models
Taiwan Green AI Pilot Program Award, National Science and Technology Council
Innovative AI Applications in Humanities and Scientific Research (I-AI-A) Award, Academia Sinica
Career Development Award (5-year competitive research funding), Academia Sinica
Young Scholar Innovation Award, Foundation for The Advancement of Outstanding Scholarship
2030 Cross-Generation Young Scholar Program (top 15% tier; 3-year competitive research funding award), National Science and Technology Council
Scientific Coordinator, Bernstein Node Taiwan, Bernstein Network Computational Neuroscience
Board of Directors, Taiwanese Society for Computational Neuroscience
National Taiwan University, B.Sc. Major in Zoology (Life Science), Minor in Electrical Engineering
National Taiwan University, Ph.D. in Neurobiology
Janelia Research Campus, Howard Hughes Medical Institute (HHMI), Postdoctoral Associate
(Advisor: Nelson Spruston)
Janelia Research Campus, Howard Hughes Medical Institute (HHMI), Research Scientist
Job Description
Ching-Lung Hsu Lab at Academia Sinica is setting up a series of quantitative behavioral assays in experimental computational neuroethology. In these freely moving and virtual-reality (VR) settings, mice will be trained to perform memory-dependent spatial navigation tasks. The intern should have experience in handling rodents, and will join collaborative workforce to integrate with the neuro-behavioral team to find out causal mechanism of brain circuits for brain computational processes.
Preferred Intern Educational Level
Undergraduate- or graduate-level education in biological or psychological sciences, engineering or other quantitative backgrounds.
Skill sets or Qualities
- experience in handling rodents or work in wet biological laboratories
- quantitative data analysis skills
- basics in neurobiology and/or behavioral sciences
- patience, flexible work time, highly responsible
- collaborative and communicative to fit with the lab culture